Posts classified under: Affinity Groups

Whitney B. Pope, M.D., Ph.D.

Faculty Member

Professor in Residence
Department of Radiological Sciences (Neuroradiology)
David Geffen School of Medicine
University of California, Los Angeles

 

757 Westwood Plaza, Room 1621E
Los Angeles, CA 90095

 

Publications

A selected list of publications:

Ellingson Benjamin M, Cloughesy Timothy F, Lai Albert, Nghiemphu Phioanh L, Pope Whitney B   Cell invasion, motility, and proliferation level estimate (CIMPLE) maps derived from serial diffusion MR images in recurrent glioblastoma treated with bevacizumab Journal of neuro-oncology, 2011; 105(1): 91-101.
Ellingson Benjamin M, Cloughesy Timothy F, Lai Albert, Mischel Paul S, Nghiemphu Phioanh L, Lalezari Shadi, Schmainda Kathleen M, Pope Whitney B   Graded functional diffusion map-defined characteristics of apparent diffusion coefficients predict overall survival in recurrent glioblastoma treated with bevacizumab Neuro-oncology, 2011; 105(1): .
Ellingson Benjamin M, Cloughesy Timothy F, Lai Albert, Nghiemphu Phioanh L, Liau Linda M, Pope Whitney B   High order diffusion tensor imaging in human glioblastoma Academic radiology, 2011; 18(8): 947-54.
Pope Whitney B, Young Jonathan R, Ellingson Benjamin M   Advances in MRI assessment of gliomas and response to anti-VEGF therapy Current neurology and neuroscience reports, 2011; 11(3): 336-44.
Ellingson Benjamin M, Cloughesy Timothy F, Lai Albert, Nghiemphu Phioanh L, Pope Whitney B   Nonlinear registration of diffusion-weighted images improves clinical sensitivity of functional diffusion maps in recurrent glioblastoma treated with bevacizumab Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine, 2011; 18(8): .
Ellingson Benjamin M, Cloughesy Timothy F, Lai Albert, Nghiemphu Phioanh L, Lalezari Shadi, Zaw Taryar, Motevalibashinaeini Kourosh, Mischel Paul S, Pope Whitney B   Quantification of edema reduction using differential quantitative T2 (DQT2) relaxometry mapping in recurrent glioblastoma treated with bevacizumab Journal of neuro-oncology, 2011; 18(8): .
Ellingson Benjamin M, Cloughesy Timothy F, Lai Albert, Nghiemphu Phioanh L, Mischel Paul S, Pope Whitney B   Quantitative volumetric analysis of conventional MRI response in recurrent glioblastoma treated with bevacizumab Neuro-oncology, 2011; 13(4): 401-9.
Lai Albert, Tran Anh, Nghiemphu Phioanh L, Pope Whitney B, Solis Orestes E, Selch Michael, Filka Emese, Yong William H, Mischel Paul S, Liau Linda M, Phuphanich Surasak, Black Keith, Peak Scott, Green Richard M, Spier Cynthia E, Kolevska Tatjana, Polikoff Jonathan, Fehrenbacher Louis, Elashoff Robert, Cloughesy Timothy   Phase II study of bevacizumab plus temozolomide during and after radiation therapy for patients with newly diagnosed glioblastoma multiforme Journal of clinical oncology : official journal of the American Society of Clinical Oncology, 2011; 29(2): 142-8.
Ringman John Matthew, Pope Whitney, Salamon Noriko   Insensitivity of visual assessment of hippocampal atrophy in familial Alzheimer’s disease Journal of neurology, 2010; 257(5): 839-42.
Kappadakunnel Melanie, Eskin Ascia, Dong Jun, Nelson Stanley F, Mischel Paul S, Liau Linda M, Ngheimphu Phioanh, Lai Albert, Cloughesy Timothy F, Goldin Jonathan, Pope Whitney B   Stem cell associated gene expression in glioblastoma multiforme: relationship to survival and the subventricular zone Journal of neuro-oncology, 2010; 96(3): 359-67.
Harley Erin M, Pope Whitney B, Villablanca J Pablo, Mumford Jeanette, Suh Robert, Mazziotta John C, Enzmann Dieter, Engel Stephen A   Engagement of fusiform cortex and disengagement of lateral occipital cortex in the acquisition of radiological expertise Cerebral cortex (New York, N.Y. : 1991), 2009; 19(11): 2746-54.
Ledezma Carlos J, Chen Wei, Sai Victor, Freitas Bonnie, Cloughesy Tim, Czernin Johannes, Pope Whitney   18F-FDOPA PET/MRI fusion in patients with primary/recurrent gliomas: initial experience European journal of radiology, 2009; 71(2): 242-8.
Khanlou Négar, Mathern Gary W, Mitchell Wendy G, Salamon Noriko, Pope Whitney B, Yong William H, Vinters Harry V   Cortical dysplasia with prominent Rosenthal fiber formation in a case of intractable pediatric epilepsy Human pathology, 2009; 40(8): 1200-4.
Pope Whitney B, Kim Hyun J, Huo Jing, Alger Jeffry, Brown Matthew S, Gjertson David, Sai Victor, Young Jonathan R, Tekchandani Leena, Cloughesy Timothy, Mischel Paul S, Lai Albert, Nghiemphu Phioanh, Rahmanuddin Syed, Goldin Jonathan   Recurrent glioblastoma multiforme: ADC histogram analysis predicts response to bevacizumab treatment Radiology, 2009; 252(1): 182-9.
Pope Whitney B, Chen Jenny H, Dong Jun, Carlson Marc R J, Perlina Alla, Cloughesy Timothy F, Liau Linda M, Mischel Paul S, Nghiemphu Phioanh, Lai Albert, Nelson Stanley F   Relationship between gene expression and enhancement in glioblastoma multiforme: exploratory DNA microarray analysis Radiology, 2008; 249(1): 268-77.
Lai Albert, Filka Emese, McGibbon Bruce, Nghiemphu Phioanh Leia, Graham Carrie, Yong William H, Mischel Paul, Liau Linda M, Bergsneider Marvin, Pope Whitney, Selch Michael, Cloughesy Tim   Phase II pilot study of bevacizumab in combination with temozolomide and regional radiation therapy for up-front treatment of patients with newly diagnosed glioblastoma multiforme: interim analysis of safety and tolerability International journal of radiation oncology, biology, physics, 2008; 71(5): 1372-80.
Ananthnarayan Suchitra, Bahng Jennie, Roring James, Nghiemphu Phioanh, Lai Albert, Cloughesy Timothy, Pope Whitney B   Time course of imaging changes of GBM during extended bevacizumab treatment Journal of neuro-oncology, 2008; 88(3): 339-47.
Nghiemphu Phioanh Leia, Green Richard M, Pope Whitney B, Lai Albert, Cloughesy Timothy F   Safety of anticoagulation use and bevacizumab in patients with glioma Neuro-oncology, 2008; 10(3): 355-60.
Morioka Craig A, El-Saden Suzie, Pope Whitney, Sayre James, Duckwiler Gary, Meng Frank, Bui Alex, Kangarloo Hooshang   A methodology to integrate clinical data for the efficient assessment of brain-tumor patients Informatics for health & social care, 2008; 33(1): 55-68.
Nael Kambiz, Villablanca J Pablo, Mossaz Léonard, Pope Whitney, Juncosa Alex, Laub Gerhard, Finn J Paul   3-T contrast-enhanced MR angiography in evaluation of suspected intracranial aneurysm: comparison with MDCT angiography AJR. American journal of roentgenology, 2008; 190(2): 389-95.
Chen Wei, Delaloye Sibylle, Silverman Daniel H S, Geist Cheri, Czernin Johannes, Sayre James, Satyamurthy Nagichettiar, Pope Whitney, Lai Albert, Phelps Michael E, Cloughesy Timothy   Predicting treatment response of malignant gliomas to bevacizumab and irinotecan by imaging proliferation with [18F] fluorothymidine positron emission tomography: a pilot study Journal of clinical oncology : official journal of the American Society of Clinical Oncology, 2007; 25(30): 4714-21.
Carlson Marc R J, Pope Whitney B, Horvath Steve, Braunstein Jerome G, Nghiemphu Phioanh, Tso Cho-Lea, Mellinghoff Ingo, Lai Albert, Liau Linda M, Mischel Paul S, Dong Jun, Nelson Stanley F, Cloughesy Timothy F   Relationship between survival and edema in malignant gliomas: role of vascular endothelial growth factor and neuronal pentraxin 2 Clinical cancer research : an official journal of the American Association for Cancer Research, 2007; 13(9): 2592-8.
Nael Kambiz, Villablanca J Pablo, Pope Whitney B, McNamara Thomas O, Laub Gerhard, Finn J Paul   Supraaortic arteries: contrast-enhanced MR angiography at 3.0 T–highly accelerated parallel acquisition for improved spatial resolution over an extended field of view Radiology, 2007; 242(2): 600-9.
Chen Wei, Silverman Daniel H S, Delaloye Sibylle, Czernin Johannes, Kamdar Nirav, Pope Whitney, Satyamurthy Nagichettiar, Schiepers Christiaan, Cloughesy Timothy   18F-FDOPA PET imaging of brain tumors: comparison study with 18F-FDG PET and evaluation of diagnostic accuracy Journal of nuclear medicine : official publication, Society of Nuclear Medicine, 2006; 47(6): 904-11.
Nael Kambiz, Ruehm Stefan G, Michaely Henrik J, Pope Whitney, Laub Gerhard, Finn J Paul, Villablanca J Pablo   High spatial-resolution CE-MRA of the carotid circulation with parallel imaging: comparison of image quality between 2 different acceleration factors at 3.0 Tesla Investigative radiology, 2006; 41(4): 391-9.
Pope Whitney B, Sayre James, Perlina Alla, Villablanca J Pablo, Mischel Paul S, Cloughesy Timothy F   MR imaging correlates of survival in patients with high-grade gliomas AJNR. American journal of neuroradiology, 2006; 26(10): 2466-74.

Gina Poe, Ph.D.

Faculty Member

Professor & Director of Brain Research Institute
Department of Integrative Biology & Physiology
Department of Psychiatry & Biobehavioral Sciences
University of California, Los Angeles

 

Terasaki Life Sciences Building, Room 1032
610 Charles E Young Dr S,
Los Angeles, CA 90095

Biography

Gina Poe has been working since 1995 on the mechanisms through which sleep serves memory consolidation and restructuring. Dr. Poe is a southern California native who graduated from Stanford University then worked for two post-baccalaureate years at the VA researching Air Force Test Pilots’ brainwave signatures under high-G maneuvers. She then earned her PhD in Basic Sleep in the Neuroscience Interdepartmental Program at UCLA under the guidance of Ronald Harper then moved to the University of Arizona for her postdoctoral studies with Carol Barnes and Bruce McNaughtons looking at graceful degradation of hippocampal function in aged rats as well as hippocampal coding in a 3-D maze navigated in the 1998 space shuttle mission. She brought these multiunit teachings to answer a burning question of whether REM sleep were for remembering or forgetting and found that activity of neurons during REM sleep is consistent both with the consolidation of novel memories and the elimination of already consolidated memories from the hippocampus, readying the associative memory network for new learning the next day. Moving first to Washington State University then to the University of Michigan before joining UCLA in 2016, Poe has over 80 undergraduates, 9 graduate students, and 8 postdoctoral scholars, and has served in university faculty governance as well as led 5 different programs designed to diversify the neuroscience workforce and increase representation of people of the global majority in the STEM fields. At UCLA she continues research and teaching and Directs the COMPASS-Life Sciences and BRI-SURE programs and co-Directs the MARC-U*STAR program. Nationally she has served as course director of the Marine Biological Lab’s SPINES course and co-Directs the Society for Neuroscience’s NSP program which earned the nation’s highest mentoring honor in 2018. These programs have over 1000 PhD level alumni.

 

Research Interests

The Poe lab investigates the mechanisms by which sleep traits serve learning and memory consolidation. Memories are encoded by the pattern of synaptic connections between neurons. We employ tetrode recording and optogenetic techniques in learning animals to see how neural patterns underlying learning are reactivated during sleep, and how activity during sleep influences the neural memory code. Both strengthening and weakening of synapses is important to the process of sculpting a network when we make new memories and integrate them into old schema. Results from our studies suggest that while synaptic strengthening can be efficiently accomplished during the waking learning process, the synaptic weakening part of memory integration requires conditions unique to sleep. The absence of noradrenaline during sleep spindles and REM sleep as well as the low levels of serotonin during REM sleep allow the brain to integrate new memories and to refresh and renew old synapses so that we are ready to build new associations the next waking period. Memory difficulties involved in post-traumatic stress disorder, Schizophrenia, Alzheimer’s disease and even autism involve abnormalities in the sleep-dependent memory consolidation process that my lab studies. Keywords: Sleep, learning and memory, PTSD, memory consolidation, reconsolidation, REM sleep, sleep spindles, Norepinephrine, LTP, depotentiation, reversal learning, optogenetics, electrophysiology, tetrode recordings, hippocampus, prefrontal cortex.

 

Education

B.A., Human Biology, Stanford University 1987

Ph.D., Neuroscience, University of California, Los Angeles 1995

 

Selected Publications

Cao J, Herman AB, West GB, Poe G, Savage VM. Unraveling why we sleep: Quantitative analysis reveals abrupt transition from neural reorganization to repair in early development. Sci Adv 6(38):eaba0398 (11 pages), 2020. doi: 10.1126/sciadv.aba0398.

Guthrie R, Ciliberti D, Mankin E, Poe GR. Recurrent hippocampo-neocortical sleep-state divergence in humans. PNAS 119(44): e2123427119, PM36279474, 2022.

Frazer M, Cabrera Y, Guthrie R, Poe GR. Shining a light on the mechanisms of sleep for memory consolidation. Current Sleep Medicine Rep, 7:221-231, 2021. https://doi.org/10.1007/s40675-021-00204-3.

Cabrera Y, Holloway J, Poe GR (2020) ‘Sleep Changes Across the Female Hormonal Cycle Affecting Memory: Implications for Resilient Adaptation to Traumatic Experiences.’ J Womens Health (Larchmt), 29 (3): 446-451. PMID: 32186966

Swift KM, Keus K, Echeverria CG, Cabrera Y, Jimenez J, Holloway J, Clawson BC, Poe GR () ‘Sex differences within sleep in gonadally-intact rats.’ Sleep, 2019.PMID: 31784755

Swift KM, Gross BA, Frazer MA, Bauer DS, Clark KJD, Vazey EM, Aston-Jones G, Li Y, Pickering AE, Sara SJ, Poe GR (2018) ‘Abnormal Locus Coeruleus Sleep Activity Alters Sleep Signatures of Memory Consolidation and Impairs Place Cell Stability and Spatial Memory.’ Curr Biol, 28 (22): 3599-3609.e4. PMID: 30393040

Zaborszky L, Gombkoto P, Varsanyi P, Poe GR, Role L, Ananth M, Rajebhosale P, Talmage D, Hasselmo M, Dannenberg H, Minces V, Chiba A, “Specific basal forebrain-cortical cholinergic circuits coordinate cognitive operations”, J Neurosci, 38 (44): 9446-9458 (2018).

Lewis P, Knoblich G, Poe GR, “Recasting reality: how memory replay in sleep boosts creative problem solving”, Trends Cogni Sci, 22 (6): 491-503 (2018).

Bjorness TE, Booth V, Poe GR (2018) ‘Hippocampal theta power pressure builds over non-REM sleep and dissipates within REM sleep episodes.’ Arch Ital Biol, 156 (3): 112-126. PMID: 30324607

Poe GR (2017) ‘Sleep Is for Forgetting.’ J Neurosci, 37 (3): 464-473. PMID: 28100731

Javanbakht, A and Poe, GR, “Behavioral neuroscience of circuits involved in arousal regulation”, The Neurobiology of PTSD, Ressler, K and Liberzon, I(Eds.), 130-147 (2016).

Emrick JJ, Gross BA, Riley BT, Poe GR (2016) ‘Different Simultaneous Sleep States in the Hippocampus and Neocortex.’ Sleep, 39 (12): 2201-2209. PMID: 27748240

Vanderheyden WM, George SA, Urpa L, Kehoe M, Liberzon I, Poe GR (2015) ‘Sleep alterations following exposure to stress predict fear-associated memory impairments in a rodent model of PTSD.’ Exp Brain Res, 233 (8): 2335-46. PMID: 26019008.

Watts A, Gritton HJ, Sweigart J, Poe GR (2012) ‘Antidepressant suppression of non-REM sleep spindles and REM sleep impairs hippocampus-dependent learning while augmenting striatum-dependent learning.’ J Neurosci, 32 (39): 13411-20. PMID: 23015432

Booth V, Poe GR (2006) ‘Input source and strength influences overall firing phase of model hippocampal CA1 pyramidal cells during theta: relevance to REM sleep reactivation and memory consolidation.’ Hippocampus, 16 (2): 161-73. PMID: 16411243

Patricia Phelps, Ph.D.

Faculty Member

Professor and Vice Chair
Department of Integrative Biology and Physiology
David Geffen School of Medicine
University of California, Los Angeles

 

Laboratory: Terasaki Life Science Building
Office: 1024 Terasaki Life Science Building

 

Publications

A selected list of publications:

Khankan, R.R., I.B. Wanner, and P.E. Phelps   Olfactory ensheathing cell-neurite alignment enhances neurite outgrowth in scar-like cultures, Experimental Neurology, 2015; 269: 93-101.
Abadesco, A., M. Cilluffo, G.M. Yvone, E.M. Carpenter, B.W. Howell, and P.E. Phelps   Novel Disabled-1-expressing neurons identified in adult brain and spinal cord, European Journal of Neuroscience , 2014; 39: 579-592.
Awe, J.P., P.C. Lee, C. Ramathal, A. Vega-Crespo, J. Durruthy-Durruthy, A. Cooper, S. Karumbayaram, W. Lowry, A. Clark, J. Zack, V. Sebastiano, D. Kohn, A. Pyle, M. Martin, G.S. Lipshutz, P.E. Phelps, R. Reijo Pera and J.A. Byrne   Generation and characterization of transgene-free human induced pluripotent stem cells and conversion to putative clinical-grade status, Stem Cell Research & Therapy, 2013; 4: 87.
Wang, X., A.H. Babayan, A.I. Basbaum and P.E. Phelps   Loss of the Reelin-signaling pathway differentially disrupts heat, mechanical and chemical nociceptive processing. , Neuroscience, 2012; 226: 441-450.
Moore K.D, Chen R., Cilluffo M., Golden J.A., Phelps P.E.   Lis1 reduction causes tangential migratory errors in mouse spinal cord The Journal of Comparative Neurology, 2012; 520: 1198-211.
Takeoka, A., D.L. Jindrich, C. Muñoz-Quiles, H. Zhong, R. van den Brand, D.L. Pham, M.D. Ziegler, A. Ramón-Cueto, R.R. Roy, V.R. Edgerton, and P.E. Phelps   Axon regeneration can facilitate or suppress hindlimb function after OEG transplantation, Journal of Neuroscience, 2011; 31: 4298-4310.
Download
Ziegler MD, Hsu D, Takeoka A, Zhong H, Ramón-Cueto A, Phelps PE, Roy RR, and Edgerton VR   Further evidence of Olfactory Ensheathing Glia facilitating axonal regeneration after a complete spinal cord transection, Experimental Neurology, 2011; 229: 109-119.
Takeoka, A, Kubasak, MD, Zhong, H, Kaplan, J, Roy, RR, Phelps, PE   Noradrenergic innervation of the rat spinal cord caudal to a complete spinal cord transection: Effects of olfactory ensheathing glia Experimental Neurology, 2010; 222: 59-69.
Download
Phelps Patricia E   Reelin induces a common signal for spinal cord and cerebral cortical migration (commentary on Kruger et al.) The European Journal of Neuroscience, 2010; 32: 1609-10.
Shields*, S.D., K.D. Moore*, P.E. Phelps, and A.I. Basbaum   Olfactory ensheathing glia express Aquaporin 1, Journal of Comparative Neurology , 2010; 518: 4329-4341.
Download
Takeoka Aya, Kubasak Marc D, Zhong Hui, Roy Roland R, Phelps Patricia E   Serotonergic innervation of the caudal spinal stump in rats after complete spinal transection: Effect of olfactory ensheathing glia Journal of Comparative Neurology, 2009; 515: 664-76.
Download
Runyan, SA, Phelps, PE   Mouse olfactory ensheathing glia enhance axon outgrowth on a myelin Experimental Neurology, 2009; 216: 95-104.
Download
Akopians Alin L, Babayan Alex H, Beffert Uwe, Herz Joachim, Basbaum Allan I, Phelps Patricia E   Contribution of the Reelin signaling pathways to nociceptive processing European Journal of Neuroscience, 2008; 27: 523-37.
Download
Kubasak, MD, Jindrich, DL, Zhong, H, Takeoka, A, McFarland, KC, Munoz-Quiles, C, Roy, RR, Edgerton, VR, Ramon-Cueto, A, Phelps, PE   OEG implantation and step training enhance hindlimb-stepping ability in adult spinal transected rats Brain, 2008; 131: 264-76.
Download
Villeda, SA, Akopians, AL, Babayan, AH, Basbaum, AI, and Phelps, PE   Absence of reelin results in altered nociception and aberrant neuronal positioning in the dorsal spinal cord, Neuroscience, 2006; 139: 1385-1396.
Download
Tran T.S, Cohen-Cory S., Phelps P.E.   Embryonic GABAergic spinal commissural neurons project rostrally to mesencephalic targets The Journal of Comparative Neurology, 2004; 475: 327-39.
Tran, TS, Cohen-Cory, S and Phelps, PE   Embryonic GABAergic spinal commissural neurons project rostrally to mesencepahlic targets Journal of Comparative Neurology, 2004; 475: 327-339.
Download
Kubasak, MD Brooks, R Chen, S Villeda, SA Phelps, PE   Developmental distribution of reelin-positive cells and their secreted product in the rodent spinal cord Journal of Comparative Neurology, 2004; 468: 165-78.
Download
Akopians, A Runyan, SA Phelps, PE   Expression of L1 decreases during postnatal development of rat spinal cord Journal of Comparative Neurology, 2003; 467: 375-88.
Download
Tran, TS Alijani, A Phelps, PE   Unique developmental patterns of GABAergic neurons in rat spinal cord Journal Comparative Neurology , 2003; 456(2): 112-26.
Download
Phelps, PE, Rich, R, Dupuy-Davies, S, Rios, Y, and Wong, T   Evidence for a cell-specific action of Reelin in the spinal cord Developmental Biology, 2002; 244: 180-198.
Download
Orlino, EN Wong, CM Phelps, PE   L1 and GAD65 are expressed on dorsal commissural axons in embryonic rat spinal cord Developmental Brain Research, 2000; 125(1-2): 117-30.
Download
Foster, JA Phelps, PE   Neurons expressing NADPH-diaphorase in the developing human spinal cord Journal Comparative Neurology , 2000; 427(3): 417-27.
Phelps, PE Alijani, A Tran, TS   Ventrally located commissural neurons express the GABAergic phenotype in developing rat spinal cord Journal Comparative Neurology, 1999; 409(2): 285-98.
Phelps, PE Barber, RP Vaughn, JE   Nonradial migration of interneurons can be experimentally altered in spinal cord slice cultures Development (Cambridge, England) , 1996; 122(7): 2013-22.